Genome-wide Prediction of DNase I Hypersensitivity and Transcription Factor Binding Sites Based on Gene Expression

Hong Kai Ji (Biostatistics)

Ted Dawson (Neurology (SOM),Neurology (JHH), Neuroscience (SOM))

Valina Dawson (Neurology (SOM), Neuroscience (SOM), Physiology (SOM))

In this project the investigators will develop a data science approach for studying global gene regulation. They will utilize massive amounts of publicly available functional genomic data to build computational models to predict genome-wide cis-regulatory element activities based on gene expression data. The investigators will develop new high-dimensional regression and prediction methods for big data and test the feasibility of predicting cis-regulatory element activities in samples where the available material is insufficient for conventional ChIP-seq and DNase-seq experiments.


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